Stem-loop sequence eca-mir-496

Accession

MI0012909 (change log)

Description

Equus caballus miR-496 stem-loop

Gene family

MIPF0000018; mir-154

Stem-loop

   a   ---u  --cca      c   u        u     gu         uua 
5'  ccc    ag     gguacu gaa ggagguug ccaug  guguucauu   u
    |||    ||     |||||| ||| |||||||| |||||  |||||||||    
3'  ggg    uc     ucauga cuu ccucuaac gguac  uaugaguag   u
   -   uucu  uuaaa      -   u        c     au         uau 

Deep sequencing

23 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42930990-42931092 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-496

• eca-mir-3959: chr24: 42921540-42921650 [+]
• eca-mir-487a: chr24: 42921992-42922071 [+]
• eca-mir-382: chr24: 42924862-42924937 [+]
• eca-mir-134: chr24: 42925245-42925315 [+]
• eca-mir-485: chr24: 42925986-42926058 [+]
• eca-mir-154a: chr24: 42930163-42930226 [+]
• eca-mir-154b: chr24: 42930413-42930553 [+]
• eca-mir-496: chr24: 42930990-42931092 [+]
• eca-mir-377: chr24: 42932739-42932807 [+]
• eca-mir-541: chr24: 42934714-42934797 [+]
• eca-mir-409: chr24: 42935634-42935712 [+]
• eca-mir-412: chr24: 42935784-42935863 [+]
• eca-mir-369: chr24: 42935933-42936002 [+]
• eca-mir-410: chr24: 42936264-42936337 [+]
• eca-mir-656: chr24: 42937011-42937088 [+]

Database links

• EntrezGene:MIR496
• miRBase Tracker:MI0012909

Mature sequence eca-miR-496

• Accession: MIMAT0013166
• Sequence: 57 - ugaguauuacauggccaaucuc - 78
• Deep sequencing: 21 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).