miRBase entry: eca-mir-495

Stem-loop eca-mir-495


Accession
MI0012908
Description
Equus caballus eca-mir-495 precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

108 reads, 16 reads per million, 1 experiments
uggucccugaaaagaaguugcccauguuauuuucgcuugauaugugacgAAACAAACAUGGUGCACUUCUUuuucgguauca
((((.((.((((((((((.(((((((((..((((((.........).)))))..))))))).)))))))))))).)).))))

Structure
    c  u          u  -       au     - uug 
uggu cc gaaaagaagu gc ccauguu  uuucg c   a
|||| || |||||||||| || |||||||  ||||| |   u
acua gg uuuUUCUUCA CG GGUACAA  AAAgc g   a
    u  c          -  U       AC     a ugu 


Annotation confidence Not enough data
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Genome context
chr24: 42906084-42906165 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from eca-mir-495
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-495

Accession MIMAT0013165
Description Equus caballus eca-miR-495 mature miRNA
Sequence 50 - AAACAAACAUGGUGCACUUCUU - 71
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131