Stem-loop sequence eca-mir-493b

Accession

MI0012906 (change log)

Description

Equus caballus miR-493b stem-loop

Gene family

MIPF0000230; mir-493

Literature search

1 open access papers mention eca-mir-493b
(2 sentences)

Stem-loop

        cuc        u        u           cauuc  u 
5' cuggc   cagggccu guacaugg aggcuuucauu     gu u
   |||||   |||||||| |||||||| |||||||||||     ||  
3' gaccg   gucucgga cgugugcc ucuggaagugg     ca g
        --u        c        u           -cuua  c 

Deep sequencing

370 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr24: 42729572-42729660 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-493b

• eca-mir-493b: chr24: 42729572-42729660 [+]
• eca-mir-337: chr24: 42738909-42739000 [+]

Database links

• EntrezGene:MIR493B
• miRBase Tracker:MI0012906

Mature sequence eca-miR-493b

• Accession: MIMAT0013163
• Sequence: 57 - ugaaggucuuccgugugccagg - 78
• Deep sequencing: 25 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).