miRBase entry: eca-mir-487a

Stem-loop eca-mir-487a


Accession
MI0012904
Description
Equus caballus eca-mir-487a precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

250 reads, 38 reads per million, 1 experiments
gguacuugaagagugguuaucccugcuguguucgcuguauuuaugacgAAUCAUACAGGGACAUCCAGUUuuucaguauc
((((((.(((((.(((...((((((.(((((((((.........).)))).))))))))))...))).))))).))))))

Structure
      u     g   uua      c    -    - ugu 
gguacu gaaga ugg   ucccug ugug uucg c   a
|||||| ||||| |||   |||||| |||| |||| |   u
cuauga uuuUU ACC   AGGGAC AUAC AAgc g   u
      c     G   UAC      -    U    a uau 


Annotation confidence Not enough data
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Genome context
chr24: 42921992-42922071 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from eca-mir-487a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-487a

Accession MIMAT0013161
Description Equus caballus eca-miR-487a mature miRNA
Sequence 49 - AAUCAUACAGGGACAUCCAGUU - 70
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131