miRBase entry: eca-mir-337

Stem-loop eca-mir-337


Accession
MI0012883
Description
Equus caballus eca-mir-337 precursor miRNA
Gene family
MIPF0000195; mir-337


Sequence

8 reads, 1 reads per million, 1 experiments
guagucaguagguggggggugaGAACGGCUUCAUACAGGAGCUgaugcgcaguuacccagCUCCUAUGAGAUGCCUUUCCUCaccccuucac
...........((((((((((((((.(((.((.((.((((((((.............)))))))).)).)).))).)).)))))))).))))

Structure
guagucaguag    -        -  C   U  A  C        augcg 
           gugg ggggugaG AA GGC UC UA AGGAGCUg     c
           |||| |||||||| || ||| || || ||||||||     a
           cacu ccccaCUC UU CCG AG GU UCCUCgac     g
-----------    u        C  U   U  A  A        ccauu 


Annotation confidence Not enough data
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Genome context
chr24: 42738909-42739000 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from eca-mir-337
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-337-5p

Accession MIMAT0013134
Description Equus caballus eca-miR-337-5p mature miRNA
Sequence 23 - GAACGGCUUCAUACAGGAGCU - 43
Evidence not_experimental

Mature eca-miR-337-3p

Accession MIMAT0013135
Description Equus caballus eca-miR-337-3p mature miRNA
Sequence 61 - CUCCUAUGAGAUGCCUUUCCUC - 82
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131