Stem-loop eca-mir-1185

Accession

MI0012873

Description

Equus caballus eca-mir-1185 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

31 reads, 5 reads per million, 1 experiments

uuugguacuugaagAGAGGAUACCCUUUGUAUGUUcacuucauuaaugacgaauauacagggggagacucuuauuugcguaucaaa
.(((((((.(((((((((..(.((((((((((((((...(((....))).)))))))))))))))..))))).)))).))))))).

Structure

u       u    -     GA A              acu   u 
 uugguac ugaa gAGAG  U CCCUUUGUAUGUUc   uca u
 ||||||| |||| |||||  | ||||||||||||||   |||  
 aacuaug guuu uucuc  a gggggacauauaag   agu a
a       c    a     ag -              --c   a 

Annotation confidence Not enough data

Genome context

chr24: 42914351-42914436 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from eca-mir-1185

Mature eca-miR-1185

• Accession: MIMAT0013123
• Description: Equus caballus eca-miR-1185 mature miRNA
• Sequence: 15 - AGAGGAUACCCUUUGUAUGUU - 35
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131