miRBase entry: eca-mir-872

Stem-loop eca-mir-872


Accession
MI0012870
Description
Equus caballus eca-mir-872 precursor miRNA
Gene family
MIPF0000399; mir-872


Sequence

168 reads, 25 reads per million, 1 experiments
uacuuguuagAAGGUUACUUGUUAGUUCAGGaccucguuauuucuugccugaacuuugcaguagccuccuaacuggucuc
.(((.(((((.((((((((.((.((((((((................))))))))..)))))))))).))))).)))...

Structure
--u   u     A        U  -U        accucgu 
   acu guuag AGGUUACU GU  AGUUCAGG       u
   ||| ||||| |||||||| ||  ||||||||        
   ugg caauc uccgauga cg  ucaagucc       a
cuc   u     c        -  uu        guucuuu 


Annotation confidence Not enough data
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Genome context
chr23: 44847400-44847479 [+]

Database links

Mature eca-miR-872

Accession MIMAT0013119
Description Equus caballus eca-miR-872 mature miRNA
Sequence 11 - AAGGUUACUUGUUAGUUCAGG - 31
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131