Stem-loop sequence eca-mir-24-2

AccessionMI0012864 (change log)
DescriptionEquus caballus miR-24-2 stem-loop
Gene family MIPF0000041; mir-24
Literature search

3 open access papers mention eca-mir-24-2
(4 sentences)

       g  g   a         ua     ucuca 
5' cucc gu ccu cugagcuga  ucagu     u
   |||| || ||| |||||||||  |||||     u
3' gagg ca gga gacuugacu  gguca     u
       a  a   c         -c     cacau 
Get sequence
Deep sequencing
3118 reads, 150 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr23: 2317177-2317244 [-]
Clustered miRNAs
< 10kb from eca-mir-24-2
eca-mir-23bchr23: 2317924-2317997 [-]
eca-mir-27bchr23: 2317696-2317768 [-]
eca-mir-24-2chr23: 2317177-2317244 [-]
Database links

Mature sequence eca-miR-24

Accession MIMAT0012987

44 - 


 - 65

Get sequence
Deep sequencing6192 reads, 1 experiments
Evidence not experimental


PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).