miRBase entry: eca-mir-206-2

Stem-loop eca-mir-206-2


Accession
MI0012845
Description
Equus caballus eca-mir-206-2 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
3 open access papers mention eca-mir-206-2
(12 sentences)

Sequence

aggccacaugcuucuuuauauccccauacggauuacuuugcuaUGGAAUGUAAGGAAGUGUGUGGuuuc
.((((((((((((((((((((..(((((((((....)))).))))).))))))))))))))))))))..

Structure
-a                    cc     -    u 
  ggccacaugcuucuuuauau  ccaua cgga u
  ||||||||||||||||||||  ||||| ||||  
  uuGGUGUGUGAAGGAAUGUA  GGUau guuu a
cu                    -A     c    c 


Annotation confidence Not enough data
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Genome context
chr20: 49820595-49820663 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-206-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-206

Accession MIMAT0013098
Description Equus caballus eca-miR-206 mature miRNA
Sequence 44 - UGGAAUGUAAGGAAGUGUGUGG - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131