miRBase entry: eca-mir-1248

Stem-loop eca-mir-1248


Accession
MI0012839
Description
Equus caballus eca-mir-1248 precursor miRNA
Gene family
MIPF0000622; mir-1248

Literature search
2 open access papers mention eca-mir-1248
(2 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments
UCCUUCUUGUAUAAGCACUGUGCUAAAauugcagaaacuaggaucacuucuugguuuuuguaauaaugcuagcagaguacacacaagaagaaa
..((((((((....(.(((.(((((..((((((((((((((((.....)))))))))))))))).....))))).))).)..))))))))...

Structure
-UC        AUAA C   G     ---AA                u 
   CUUCUUGU    G ACU UGCUA     auugcagaaacuagga c
   ||||||||    | ||| |||||     |||||||||||||||| a
   gaagaaca    c uga acgau     uaauguuuuugguucu c
aaa        --ca a   g     cguaa                u 


Annotation confidence Not enough data
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Genome context
chr19: 24793833-24793925 [+]

Database links

Mature eca-miR-1248

Accession MIMAT0013091
Description Equus caballus eca-miR-1248 mature miRNA
Sequence 1 - UCCUUCUUGUAUAAGCACUGUGCUAAA - 27
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131