Stem-loop eca-mir-20a

Accession

MI0012835

Description

Equus caballus eca-mir-20a precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

2 open access papers mention eca-mir-20a
(4 sentences)

Sequence

415 reads, 63 reads per million, 1 experiments

guagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuacugcauuaugagcacuuaaaguacugc
((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).))))

Structure

    c   -A                 G   uguu 
guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||| |||  ||||||||||||||||| |||    a
cguc uga  uucacgaguauuacguc auc    g
    a   aa                 -   uauu 

Annotation confidence Not enough data

Genome context

chr17: 61792863-61792933 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-20a

Mature eca-miR-20a

• Accession: MIMAT0013088
• Description: Equus caballus eca-miR-20a mature miRNA
• Sequence: 8 - UAAAGUGCUUAUAGUGCAGGUAG - 30
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131