miRBase entry: eca-mir-19b

Stem-loop eca-mir-19b


Accession
MI0012834
Description
Equus caballus eca-mir-19b precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
3 open access papers mention eca-mir-19b
(4 sentences)

Sequence

1393 reads, 211 reads per million, 1 experiments
guuaguuuugcagguuugcauccagcugugugauguucugcUGUGCAAAUCCAUGCAAAACUGA
.(((((((((((((((((((..((((.............)))))))))).)).)))))))))))

Structure
g           -  -      uc    ugugu 
 uuaguuuugca gg uuugca  cagc     g
 ||||||||||| || ||||||  ||||     a
 AGUCAAAACGU CC AAACGU  GUcg     u
-           A  U      --    ucuug 


Annotation confidence Not enough data
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Genome context
chr17: 61793002-61793065 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from eca-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-19b

Accession MIMAT0013087
Description Equus caballus eca-miR-19b mature miRNA
Sequence 42 - UGUGCAAAUCCAUGCAAAACUGA - 64
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131