miRBase entry: eca-mir-191a

Stem-loop eca-mir-191a


Accession
MI0012825
Description
Equus caballus eca-mir-191a precursor miRNA
Gene family
MIPF0000194; mir-191

Literature search
5 open access papers mention eca-mir-191a
(8 sentences)

Sequence

97887 reads, 14817 reads per million, 1 experiments
agcgggCAACGGAAUCCCAAAAGCAGCUGuugucuccagagcauuccagcugcgcuuggauuucguucccugcu
((((((.((((((((((.((..(((((((.(((.......)))...)))))))..)))))))))))).))))))

Structure
      C          C  AA       --u   cu 
agcggg AACGGAAUCC AA  GCAGCUG   ugu  c
|||||| |||||||||| ||  |||||||   |||  c
ucgucc uugcuuuagg uu  cgucgac   acg  a
      c          -  cg       cuu   ag 


Annotation confidence High
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Genome context
chr16: 38001159-38001232 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-191a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-191a

Accession MIMAT0013079
Description Equus caballus eca-miR-191a mature miRNA
Sequence 7 - CAACGGAAUCCCAAAAGCAGCUG - 29
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131