Stem-loop sequence eca-mir-135a

Accession

MI0012823 (change log)

Description

Equus caballus miR-135a stem-loop

Gene family

MIPF0000028; mir-135

Literature search

3 open access papers mention eca-mir-135a
(14 sentences)

Stem-loop

             uu            uucua 
5' cuauggcuuu  auuccuauguga     c
   ||||||||||  ||||||||||||     u
3' ggugccgagg  uagggauauacu     g
             -u            cacuc 

Deep sequencing

262 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr16: 35417146-35417205 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR135A
• miRBase Tracker:MI0012823

Mature sequence eca-miR-135a

• Accession: MIMAT0013078
• Sequence: 2 - uauggcuuuuuauuccuauguga - 24
• Deep sequencing: 525 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).