miRBase entry: eca-mir-146a

Stem-loop eca-mir-146a


Accession
MI0012809
Description
Equus caballus eca-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
4 open access papers mention eca-mir-146a
(40 sentences)

Sequence

5108 reads, 773 reads per million, 1 experiments
agcuuUGAGAACUGAAUUCCAUGGGUUgugucagcgucagaccugugaaguucaguucuucagcu
((((..((((((((((((.((((((((.((.......)))))))))).)))))))))))).))))

Structure
    uU            C        g  uc 
agcu  GAGAACUGAAUU CAUGGGUU ug  a
||||  |||||||||||| |||||||| ||  g
ucga  uucuugacuuga guguccag ac  c
    -c            a        -  ug 


Annotation confidence Not enough data
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Genome context
chr14: 19243271-19243335 [-]

Database links

Mature eca-miR-146a

Accession MIMAT0013065
Description Equus caballus eca-miR-146a mature miRNA
Sequence 6 - UGAGAACUGAAUUCCAUGGGUU - 27
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131