Stem-loop sequence eca-mir-93

AccessionMI0012804 (change log)
DescriptionEquus caballus miR-93 stem-loop
Gene family MIPF0000001; mir-17
Literature search

1 open access papers mention eca-mir-93
(1 sentences)

Stem-loop 
   ca       -     u    g   u  g u 
5'   aagugcu guucg gcag uag gu a u
     ||||||| ||||| |||| ||| || | a
3'   uucacga cgagu cguc auc ca u c
   cc       u     -    -   -  g c
Get sequence
Deep sequencing
2994 reads, 150 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr13: 8034465-8034523 [-]
sense
ENSECAT00000028501 ; eca-mir-93-201; exon 1
ENSECAT00000015853 ; MCM7-201; intron 13
Clustered miRNAs
< 10kb from eca-mir-93
eca-mir-106bchr13: 8034691-8034749 [-]
eca-mir-93chr13: 8034465-8034523 [-]
eca-mir-25chr13: 8034246-8034329 [-]
Database links

Mature sequence eca-miR-93

Accession MIMAT0013060
Sequence

1 -  

caaagugcuguucgugcagguag

 - 23

Get sequence
Deep sequencing2993 reads, 1 experiments
Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).