Stem-loop eca-mir-590

Accession

MI0012803

Description

Equus caballus eca-mir-590 precursor miRNA

Gene family

MIPF0000418; mir-590

Sequence

44 reads, 7 reads per million, 1 experiments

caaucagaaacGAGCUUAUUCAUAAAAGUACAGuauaauccaguaaaccugUAAUUUUAUGUAUAAGCUAGUcucugauug
((((((((.((.(((((((.(((((((.(((((...............))))).))))))).))))))).)).))))))))

Structure

        a  G       U       G     uauaau 
caaucaga ac AGCUUAU CAUAAAA UACAG      c
|||||||| || ||||||| ||||||| |||||      c
guuagucu UG UCGAAUA GUAUUUU AUguc      a
        c  A       U       A     caaaug 

Annotation confidence Not enough data

Genome context

chr13: 11703520-11703600 [+]

Mature eca-miR-590-5p

• Accession: MIMAT0013058
• Description: Equus caballus eca-miR-590-5p mature miRNA
• Sequence: 12 - GAGCUUAUUCAUAAAAGUACAG - 33
• Evidence: not_experimental

Mature eca-miR-590-3p

• Accession: MIMAT0013059
• Description: Equus caballus eca-miR-590-3p mature miRNA
• Sequence: 52 - UAAUUUUAUGUAUAAGCUAGU - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131