miRBase entry: eca-mir-338

Stem-loop eca-mir-338


Accession
MI0012781
Description
Equus caballus eca-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338


Sequence

53 reads, 8 reads per million, 1 experiments
cAACAAUAUCCUGGUGCUGAGUGaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUG
((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))

Structure
      U   -         -   Ga  a 
cAACAA AUC CUGGUGCUG AGU  ug c
|||||| ||| ||||||||| |||  || a
GUUGUU UAG GACUACGAC Uca  gc c
      U   U         C   ac  a 


Annotation confidence Not enough data
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Genome context
chr11: 1976416-1976474 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-338
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-338-5p

Accession MIMAT0013035
Description Equus caballus eca-miR-338-5p mature miRNA
Sequence 2 - AACAAUAUCCUGGUGCUGAGUG - 23
Evidence not_experimental

Mature eca-miR-338-3p

Accession MIMAT0013036
Description Equus caballus eca-miR-338-3p mature miRNA
Sequence 38 - UCCAGCAUCAGUGAUUUUGUUG - 59
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131