miRBase entry: eca-mir-196a

Stem-loop eca-mir-196a


Accession
MI0012775
Description
Equus caballus eca-mir-196a precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

2 reads, 0 reads per million, 1 experiments
gugaguUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacacaacgacauuaaaccacccgacucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure
       A   A    C         - Gc ugg 
gugaguU GGU GUUU AUGUUGUUG G  c   a
||||||| ||| |||| ||||||||| |  |   u
cacucag cca caaa uacagcaac c  g   u
       c   c    u         a aa ucu 


Annotation confidence Not enough data
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Genome context
chr11: 24681625-24681694 [-]

Database links

Mature eca-miR-196a

Accession MIMAT0013028
Description Equus caballus eca-miR-196a mature miRNA
Sequence 7 - UAGGUAGUUUCAUGUUGUUGGG - 28
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131