Stem-loop sequence eca-mir-142

Accession

MI0012771 (change log)

Description

Equus caballus miR-142 stem-loop

Gene family

MIPF0000084; mir-142

Literature search

2 open access papers mention eca-mir-142
(10 sentences)

Stem-loop

   -ac           a         uaa ag a 
5'    ccauaaaguag aagcacuac   c  c c
      ||||||||||| |||||||||   |  |  
3'    gguauuucauc uuugugaug   g  g u
   gua           c         -ug ga g 

Deep sequencing

5745 reads, 300 reads per million, 2 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr11: 32583173-32583236 [-]
• Overlapping transcripts:

  sense

  ENSECAT00000028340 ; eca-mir-142-201; exon 1

Database links

• EntrezGene:MIR142
• miRBase Tracker:MI0012771

Mature sequence eca-miR-142-5p

• Accession: MIMAT0013022
• Sequence: 4 - cauaaaguagaaagcacuacu - 24
• Deep sequencing: 5485 reads, 1 experiments
• Evidence: not experimental

Mature sequence eca-miR-142-3p

• Accession: MIMAT0013023
• Sequence: 40 - uguaguguuuccuacuuuaugga - 62
• Deep sequencing: 260 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).