miRBase entry: eca-mir-142

Stem-loop eca-mir-142


Accession
MI0012771
Description
Equus caballus eca-mir-142 precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
2 open access papers mention eca-mir-142
(10 sentences)

Sequence

5217 reads, 790 reads per million, 1 experiments
accCAUAAAGUAGAAAGCACUACUaacagcacuggagggUGUAGUGUUUCCUACUUUAUGGAug
..(((((((((((.(((((((((...(..(....)..)..))))))))).)))))))))))...

Structure
-ac           A         Uaa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 


Annotation confidence High
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Genome context
chr11: 32583173-32583236 [-]

Database links

Mature eca-miR-142-5p

Accession MIMAT0013022
Description Equus caballus eca-miR-142-5p mature miRNA
Sequence 4 - CAUAAAGUAGAAAGCACUACU - 24
Evidence not_experimental

Mature eca-miR-142-3p

Accession MIMAT0013023
Description Equus caballus eca-miR-142-3p mature miRNA
Sequence 40 - UGUAGUGUUUCCUACUUUAUGGA - 62
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131