miRBase entry: eca-mir-125a

Stem-loop eca-mir-125a


Accession
MI0012760
Description
Equus caballus eca-mir-125a precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention eca-mir-125a
(1 sentences)

Sequence

34124 reads, 5165 reads per million, 1 experiments
cugggUCCCUGAGACCCUUUAACCUGUGAggacauccagggucACAGGUGAGGUUCUUGGGAGCCugg
((((((.(((((((.((((..((((((((((....))....)))))))))))).))))))).))))))

Structure
      C       C    UA        ----  a 
cugggU CCUGAGA CCUU  ACCUGUGA    gg c
|||||| ||||||| ||||  ||||||||    ||  
gguCCG GGGUUCU GGAG  UGGACAcu    cc a
      A       U    --        ggga  u 


Annotation confidence High
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Genome context
chr10: 21371573-21371640 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-125a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-125a-5p

Accession MIMAT0013008
Description Equus caballus eca-miR-125a-5p mature miRNA
Sequence 6 - UCCCUGAGACCCUUUAACCUGUGA - 29
Evidence not_experimental

Mature eca-miR-125a-3p

Accession MIMAT0013009
Description Equus caballus eca-miR-125a-3p mature miRNA
Sequence 44 - ACAGGUGAGGUUCUUGGGAGCC - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131