miRBase entry: eca-mir-30d

Stem-loop eca-mir-30d


Accession
MI0012758
Description
Equus caballus eca-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
4 open access papers mention eca-mir-30d
(7 sentences)

Sequence

34980 reads, 5295 reads per million, 1 experiments
ugugguUGUAAACAUCCCCGACUGGAAGcugugagacauggcuaagcuuucagucagauguuugcugcgac
.((.((.(((((((((...(((((((((((..(........)..))))))))))).))))))))).)).))

Structure
u  g  U         CCC           gu aga 
 gu gu GUAAACAUC   GACUGGAAGcu  g   c
 || || |||||||||   |||||||||||  |    
 ca cg cguuuguag   cugacuuucga  c   a
-  g  u         --a           au ggu 


Annotation confidence High
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Genome context
chr9: 75212697-75212767 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-30d

Accession MIMAT0013006
Description Equus caballus eca-miR-30d mature miRNA
Sequence 7 - UGUAAACAUCCCCGACUGGAAG - 28
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131