miRBase entry: eca-mir-133a

Stem-loop eca-mir-133a


Accession
MI0012749
Description
Equus caballus eca-mir-133a precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
5 open access papers mention eca-mir-133a
(12 sentences)

Sequence

1390 reads, 210 reads per million, 1 experiments
gcuagagcugguaaaauggaaccaaaucgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagc
((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))

Structure
    g       aa  u  a        gccuc 
gcua agcuggu  aa gg accaaauc     u
|||| |||||||  || || ||||||||      
cgau UCGACCA  UU CC UGGUUUag     u
    G       AC  C  C        guaac 


Annotation confidence Not enough data
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Genome context
chr8: 39915603-39915670 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-133a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-133a

Accession MIMAT0012997
Description Equus caballus eca-miR-133a mature miRNA
Sequence 43 - UUUGGUCCCCUUCAACCAGCUG - 64
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131