Stem-loop sequence eca-mir-133a

Accession

MI0012749 (change log)

Description

Equus caballus miR-133a stem-loop

Gene family

MIPF0000029; mir-133

Literature search

5 open access papers mention eca-mir-133a
(12 sentences)

Stem-loop

       g       aa  u  a        gccuc 
5' gcua agcuggu  aa gg accaaauc     u
   |||| |||||||  || || ||||||||      
3' cgau ucgacca  uu cc ugguuuag     u
       g       ac  c  c        guaac 

Deep sequencing

1590 reads, 100 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr8: 39915603-39915670 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000028024 ; eca-mir-133a-201; exon 1

  antisense

  ENSECAT00000025536 ; MIB1-201; intron 11

Clustered miRNAs

< 10kb from eca-mir-133a

• eca-mir-1-1: chr8: 39912211-39912288 [+]
• eca-mir-133a: chr8: 39915603-39915670 [+]

Database links

• EntrezGene:MIR133A
• miRBase Tracker:MI0012749

Mature sequence eca-miR-133a

• Accession: MIMAT0012997
• Sequence: 43 - uuugguccccuucaaccagcug - 64
• Deep sequencing: 3172 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).