miRBase entry: eca-mir-1-1

Stem-loop eca-mir-1-1


Accession
MI0012746
Description
Equus caballus eca-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
5 open access papers mention eca-mir-1-1
(14 sentences)

Sequence

86 reads, 13 reads per million, 1 experiments
uacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuuggu
.(((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))

Structure
u   c                     ac     ug aca 
 acu agaguacauacuucuuuaugu  ccaua  a   u
 ||| |||||||||||||||||||||  |||||  |    
 ugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
-   u                     -A     cg aac 


Annotation confidence Not enough data
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Genome context
chr8: 39912211-39912288 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-1-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-1

Accession MIMAT0012994
Description Equus caballus eca-miR-1 mature miRNA
Sequence 50 - UGGAAUGUAAAGAAGUAUGUAU - 71
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131