Stem-loop eca-mir-139

Accession

MI0012735

Description

Equus caballus eca-mir-139 precursor miRNA

Gene family

MIPF0000117; mir-139

Sequence

65 reads, 10 reads per million, 1 experiments

uacUCUACAGUGCACGUGUCUCCAGuguggcuccgaggcuGGAGACGCGGCCCUGUUGGAGUa
((((((((((.((.((((((((((((.(.(...).).)))))))))))))).))).)))))))

Structure

       -   U  A            g g c 
uacUCUA CAG GC CGUGUCUCCAGu u g  
||||||| ||| || |||||||||||| | | u
aUGAGGU GUC CG GCGCAGAGGucg a c  
       U   C  -            g g c 

Annotation confidence Not enough data

Genome context

chr7: 71082259-71082321 [+]

Mature eca-miR-139-5p

• Accession: MIMAT0012983
• Description: Equus caballus eca-miR-139-5p mature miRNA
• Sequence: 4 - UCUACAGUGCACGUGUCUCCAG - 25
• Evidence: not_experimental

Mature eca-miR-139-3p

• Accession: MIMAT0012984
• Description: Equus caballus eca-miR-139-3p mature miRNA
• Sequence: 41 - GGAGACGCGGCCCUGUUGGAGU - 62
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131