miRBase entry: eca-mir-100

Stem-loop eca-mir-100


Accession
MI0012732
Description
Equus caballus eca-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention eca-mir-100
(2 sentences)

Sequence

17351 reads, 2626 reads per million, 1 experiments
AACCCGUAGAUCCGAACUUGUGgugauaguccacacaagcuugugucuauaggua
.(((.((((((.(((.((((((.((......)))))))).))).)))))).))).

Structure
A   C      C   A      g  au 
 ACC GUAGAU CGA CUUGUG ug  a
 ||| |||||| ||| |||||| ||   
 ugg uaucug guu gaacac ac  g
a   a      u   c      -  cu 


Annotation confidence Not enough data
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Genome context
chr7: 29549390-29549444 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-100

Accession MIMAT0012980
Description Equus caballus eca-miR-100 mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131