miRBase entry: eca-mir-9a

Stem-loop eca-mir-9a


Accession
MI0012720
Description
Equus caballus eca-mir-9a precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
2 open access papers mention eca-mir-9a
(4 sentences)

Sequence

111 reads, 17 reads per million, 1 experiments
uugguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugguguggagucuucauaaagcuagauaaccgaaaguaaaaauaa
...(((.((((.(((((((((((((((.((((((.(.(....).).)))))).))))))))))))))).)))).)))..

Structure
uug   g    C               G      u g g 
   guu uuaU UUUGGUUAUCUAGCU UAUGAg g u u
   ||| |||| ||||||||||||||| |||||| | |  
   uaa aaug aagccaauagaucga auacuu u a g
-aa   a    a               a      c g g 


Annotation confidence Not enough data
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Genome context
chr5: 41824838-41824916 [+]

Database links

Mature eca-miR-9a

Accession MIMAT0012967
Description Equus caballus eca-miR-9a mature miRNA
Sequence 11 - UCUUUGGUUAUCUAGCUGUAUGA - 33
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131