miRBase entry: eca-mir-96

Stem-loop eca-mir-96


Accession
MI0012702
Description
Equus caballus eca-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
1 open access papers mention eca-mir-96
(1 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
uggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagcaaucaugugcagugccaauaugggaaa
...((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))...

Structure
ugg  g  U        A      UU      ---   uc 
   cc au UUGGCACU GCACAU  UUGCUu   gug  u
   || || |||||||| ||||||  ||||||   |||   
   gg ua aaccguga cgugua  aacgag   cgc  c
aaa  g  u        -      cu      ucu   cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 84471772-84471849 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-96

Accession MIMAT0012950
Description Equus caballus eca-miR-96 mature miRNA
Sequence 9 - UUUGGCACUAGCACAUUUUUGCU - 31
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131