miRBase entry: eca-mir-490

Stem-loop eca-mir-490


Accession
MI0012698
Description
Equus caballus eca-mir-490 precursor miRNA
Gene family
MIPF0000229; mir-490


Sequence

108 reads, 16 reads per million, 1 experiments
ucgacaCCAUGGAUCUCCAGGUGGGUcacguuuagagauacacCAACCUGGAGGACUCCAUGCUGuuga
((((((.(((((((((((((((.(((...((........))))).)))))))))..)))))).))))))

Structure
      C      --         G   cac  uua 
ucgaca CAUGGA  UCUCCAGGU GGU   gu   g
|||||| ||||||  ||||||||| |||   ||    
aguuGU GUACCU  GGAGGUCCA Cca   ca   a
      C      CA         A   ---  uag 


Annotation confidence Not enough data
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Genome context
chr4: 90776976-90777044 [+]

Database links

Mature eca-miR-490-5p

Accession MIMAT0012944
Description Equus caballus eca-miR-490-5p mature miRNA
Sequence 7 - CCAUGGAUCUCCAGGUGGGU - 26
Evidence not_experimental

Mature eca-miR-490-3p

Accession MIMAT0012945
Description Equus caballus eca-miR-490-3p mature miRNA
Sequence 44 - CAACCUGGAGGACUCCAUGCUG - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131