Stem-loop sequence eca-mir-367

Accession

MI0012674 (change log)

Description

Equus caballus miR-367 stem-loop

Gene family

MIPF0000162; mir-367

Literature search

2 open access papers mention eca-mir-367
(2 sentences)

Stem-loop

     a             ua     c   -   ca 
5' cc ucacuguugcuaa  ugcaa ucu guu  a
   || |||||||||||||  ||||| ||| |||  u
3' gg agugguaacgauu  acguu agg caa  a
     c             uc     a   u   ac 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 113629662-113629729 [+]
• Overlapping transcripts:

  antisense

  ENSECAT00000001702 ; LARP7-201; intron 8

  ENSECAT00000001915 ; LARP7-202; intron 8

Clustered miRNAs

< 10kb from eca-mir-367

• eca-mir-302b: chr2: 113629063-113629138 [+]
• eca-mir-302c: chr2: 113629201-113629268 [+]
• eca-mir-302a: chr2: 113629373-113629440 [+]
• eca-mir-302d: chr2: 113629533-113629600 [+]
• eca-mir-367: chr2: 113629662-113629729 [+]

Database links

• EntrezGene:MIR367
• miRBase Tracker:MI0012674

Mature sequence eca-miR-367

• Accession: MIMAT0012918
• Sequence: 44 - aauugcacuuuagcaaugguga - 65
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).