Stem-loop eca-mir-30e

Accession

MI0012672

Description

Equus caballus eca-mir-30e precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

4 open access papers mention eca-mir-30e
(12 sentences)

Sequence

24160 reads, 3657 reads per million, 1 experiments

gggcagucuuugcuacUGUAAACAUCCUUGACUGGAAGcuguaagguguucagaggagcuuucagucggauguuuacagcggcaggcugcca
.((((((((..(((.((((((((((((..(((((((((((.(...(....)...).))))))))))))))))))))))).))))))))))).

Structure

g        uu   a            UU           g aag u 
 ggcagucu  gcu cUGUAAACAUCC  GACUGGAAGcu u   g g
 ||||||||  ||| ||||||||||||  ||||||||||| |   |  
 ccgucgga  cgg gacauuuguagg  cugacuuucga g   c u
a        --   c            --           g aga u 

Annotation confidence High

Genome context

chr2: 17435650-17435741 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-30e

Mature eca-miR-30e

• Accession: MIMAT0012916
• Description: Equus caballus eca-miR-30e mature miRNA
• Sequence: 17 - UGUAAACAUCCUUGACUGGAAG - 38
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131