Stem-loop sequence eca-mir-200b

Accession

MI0012666 (change log)

Description

Equus caballus miR-200b stem-loop

Gene family

MIPF0000019; mir-8

Literature search

3 open access papers mention eca-mir-200b
(12 sentences)

Stem-loop

          c   cu   ug     c      u ugu 
5' gccgucg cau  uac  ggcag auugga g   c
   ||||||| |||  |||  ||||| |||||| |    
3' cggcagu gua  aug  ccguc uaaucu c   u
          a   --   gu     a      - ugg 

Deep sequencing

40 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr2: 48455071-48455139 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from eca-mir-200b

• eca-mir-200b: chr2: 48455071-48455139 [-]
• eca-mir-200a: chr2: 48454404-48454493 [-]
• eca-mir-3548: chr2: 48454387-48454515 [+]
• eca-mir-429: chr2: 48453025-48453091 [-]

Database links

• EntrezGene:MIR200B
• miRBase Tracker:MI0012666

Mature sequence eca-miR-200b

• Accession: MIMAT0012910
• Sequence: 44 - uaauacugccugguaaugauga - 65
• Deep sequencing: 40 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).