miRBase entry: eca-mir-7-1

Stem-loop eca-mir-7-1


Accession
MI0012661
Description
Equus caballus eca-mir-7-1 precursor miRNA
Gene family
MIPF0000022; mir-7

Literature search
1 open access papers mention eca-mir-7-1
(4 sentences)

Sequence

34 reads, 5 reads per million, 1 experiments
UGGAAGACUAGUGAUUUUGUUGUugucuugcugcgcccaacaacaagucccagucugccg
.((.(((((.(.(((((.(((((((............))))))))))))).))))).)).

Structure
U  A     A U     U       ucuug 
 GG AGACU G GAUUU GUUGUug     c
 || ||||| | ||||| |||||||      
 cc ucuga c cugaa caacaac     u
g  g     c -     -       ccgcg 


Annotation confidence Not enough data
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Genome context
chr1: 94574963-94575022 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-7-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-7

Accession MIMAT0012905
Description Equus caballus eca-miR-7 mature miRNA
Sequence 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131