miRBase entry: eca-mir-208a

Stem-loop eca-mir-208a


Accession
MI0012655
Description
Equus caballus eca-mir-208a precursor miRNA
Gene family
MIPF0000178; mir-208

Literature search
2 open access papers mention eca-mir-208a
(5 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
uuccugugacgggcgagcuuuuggcccggguuauaccugaugcucacguAUAAGACGAGCAAAAAGCUUGUuggucagaggag
.((((.((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).)))).)))).

Structure
u    g    g           g  c  gg      c   u 
 uccu ugac ggcgagcuuuu gc cg  uuauac uga  
 |||| |||| ||||||||||| || ||  |||||| ||| g
 agga acug uUGUUCGAAAA CG GC  AAUAug acu  
g    g    g           A  A  AG      c   c 


Annotation confidence Not enough data
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Genome context
chr1: 161483496-161483578 [-]

Database links

Mature eca-miR-208a

Accession MIMAT0012899
Description Equus caballus eca-miR-208a mature miRNA
Sequence 50 - AUAAGACGAGCAAAAAGCUUGU - 71
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131