miRBase entry: eca-mir-107b

Stem-loop eca-mir-107b


Accession
MI0012643
Description
Equus caballus eca-mir-107b precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
2 open access papers mention eca-mir-107b
(3 sentences)

Sequence

1989 reads, 301 reads per million, 1 experiments
cucucugcuuucagcuucuuuacaguguugccuuguggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacaga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure
c   c      --c    u  u           c   u   a 
 ucu ugcuuu   agcu cu uacaguguugc uug ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 


Annotation confidence Not enough data
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Genome context
chr1: 38749365-38749445 [+]

Database links

Mature eca-miR-107b

Accession MIMAT0012886
Description Equus caballus eca-miR-107b mature miRNA
Sequence 50 - AGCAGCAUUGUACAGGGCUAUCA - 72
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131