Stem-loop sequence rno-mir-711

Accession

MI0012621 (change log)

Description

Rattus norvegicus miR-711 stem-loop

Gene family

MIPF0000748; mir-711

Literature search

3 open access papers mention rno-mir-711
(5 sentences)

Stem-loop

   ccua    uga        g      g      gg 
5'     acuu   aucucuuc uagggu cuucag  a
       ||||   |||||||| |||||| ||||||   
3'     ugaa   uagagagg guccca gggguc  a
   -aac    -ug        -      -      ga 

Deep sequencing

4 reads, 233 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr8: 117711567-117711634 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000027994 ; Col7a1-201; intron 61

Database links

• EntrezGene:Mir711
• miRBase Tracker:MI0012621

Mature sequence rno-miR-711

• Accession: MIMAT0012859
• Sequence: 43 - gggacccugggagagauguaag - 64
• Deep sequencing: 2 reads, 2 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-711
  • miRDB:rno-miR-711
  • microrna.org:rno-miR-711

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).