miRBase entry: rno-mir-666

Stem-loop rno-mir-666


Accession
MI0012617
Description
Rattus norvegicus rno-mir-666 precursor miRNA
Gene family
MIPF0000782; mir-666

Literature search
2 open access papers mention rno-mir-666
(9 sentences)

Sequence

21327 reads, 80 reads per million, 298 experiments
cugauucugccugcguggAGCGGGCACGGCUGUGAGAGcccccuagguacagcggGGCUGCAGCGUGAUCGCCUGCUCacgcacaggaagugacgacag
......((.((((.(((((((((((.(((((((...((((((((......)).))))))))))).))...)))))))).))).)))).)).........

Structure
---cugauu  g    c   -        --A  -     GAG      -  ag 
         cu ccug gug gAGCGGGC   CG GCUGU   AGcccc cu  g
         || |||| ||| ||||||||   || |||||   |||||| ||   
         ga ggac cgc CUCGUCCG   GU CGACG   UCGGgg ga  u
gacagcagu  a    a   a        CUA  G     ---      c  ca 


Annotation confidence High
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Genome context
chr6: 133866523-133866621 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from rno-mir-666
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-666-5p

Accession MIMAT0012855
Description Rattus norvegicus rno-miR-666-5p mature miRNA
Sequence 19 - AGCGGGCACGGCUGUGAGAG - 38
Evidence experimental
SOLiD [2]

Mature rno-miR-666-3p

Accession MIMAT0017371
Description Rattus norvegicus rno-miR-666-3p mature miRNA
Sequence 56 - GGCUGCAGCGUGAUCGCCUGCUC - 78
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39