Stem-loop rno-mir-547

Accession

MI0012613

Description

Rattus norvegicus rno-mir-547 precursor miRNA

Gene family

MIPF0000779; mir-547

Literature search

2 open access papers mention rno-mir-547
(6 sentences)

Sequence

4929 reads, 173 reads per million, 230 experiments

gugugauguaUCACUUCAGGAUGUACCACCCAuuuaauggaaaauaugAUUGGUACUUCUUUAAGUGAGAuaaugcacacu
(((((((...((((((.((((.((((((..(((............)))..)))))).)))).))))))....)).))))).

Structure

-     -  -gua      C    U      CC   uuaau 
 gugug au    UCACUU AGGA GUACCA  CAu     g
 ||||| ||    |||||| |||| ||||||  |||      
 cacac ua    AGUGAA UUCU CAUGGU  gua     g
u     g  auAG      U    U      UA   uaaaa 

Annotation confidence High

Genome context

chrX: 155338841-155338921 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-547

Mature rno-miR-547-5p

• Accession: MIMAT0017368
• Description: Rattus norvegicus rno-miR-547-5p mature miRNA
• Sequence: 11 - UCACUUCAGGAUGUACCACCCA - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-547-3p

• Accession: MIMAT0012851
• Description: Rattus norvegicus rno-miR-547-3p mature miRNA
• Sequence: 49 - AUUGGUACUUCUUUAAGUGAGA - 70
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39