Stem-loop sequence rno-mir-547

Accession

MI0012613 (change log)

Description

Rattus norvegicus miR-547 stem-loop

Gene family

MIPF0000779; mir-547

Literature search

2 open access papers mention rno-mir-547
(6 sentences)

Stem-loop

   -     --a   a      c    u      cc   uuaau 
5'  gugug   ugu ucacuu agga guacca  cau     g
    |||||   ||| |||||| |||| ||||||  |||      
3'  cacac   aua agugaa uucu cauggu  gua     g
   u     gua   g      u    u      ua   uaaaa 

Deep sequencing

6359 reads, 23.4 reads per million, 252 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 155338841-155338921 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-547

• rno-mir-547: chrX: 155338841-155338921 [+]
• rno-mir-201: chrX: 155339140-155339219 [+]
• rno-mir-3585: chrX: 155344176-155344293 [+]

Database links

• EntrezGene:Mir547
• miRBase Tracker:MI0012613

Mature sequence rno-miR-547-5p

• Accession: MIMAT0017368
• Previous IDs: rno-miR-547*
• Sequence: 11 - ucacuucaggauguaccaccca - 32
• Deep sequencing: 3337 reads, 207 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-547-5p
  • miRDB:rno-miR-547-5p

Mature sequence rno-miR-547-3p

• Accession: MIMAT0012851
• Previous IDs: rno-miR-547
• Sequence: 49 - auugguacuucuuuaagugaga - 70
• Deep sequencing: 3022 reads, 189 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-547-3p
  • miRDB:rno-miR-547-3p
  • microrna.org:rno-miR-547-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).