Stem-loop rno-mir-465

Accession

MI0012612

Description

Rattus norvegicus rno-mir-465 precursor miRNA

Gene family

MIPF0000384; mir-465

Literature search

6 open access papers mention rno-mir-465
(13 sentences)

Sequence

358 reads, 102 reads per million, 27 experiments

ugcagugcccUAUUUAGAACGGUGCUGGUGUGaugaaugaaguuUGAUCAGUGCCUUUCUGAGUAGaguaaggcuua
.((..(((.((((((((((.(((((((((..(((.......)))..))))))))).)))))))))).)))..))...

Structure

--u  ag   c          C         GU   ga 
   gc  ugc cUAUUUAGAA GGUGCUGGU  Gau  a
   ||  ||| |||||||||| |||||||||  |||  u
   cg  aug GAUGAGUCUU CCGUGACUA  uug  g
auu  ga   a          U         GU   aa 

Annotation confidence High

Genome context

chrX: 151297367-151297443 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-465

Mature rno-miR-465-5p

• Accession: MIMAT0012850
• Description: Rattus norvegicus rno-miR-465-5p mature miRNA
• Sequence: 11 - UAUUUAGAACGGUGCUGGUGUG - 32
• Evidence: not_experimental

Mature rno-miR-465-3p

• Accession: MIMAT0017367
• Description: Rattus norvegicus rno-miR-465-3p mature miRNA
• Sequence: 45 - UGAUCAGUGCCUUUCUGAGUAG - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39