miRBase entry: rno-mir-295-1

Stem-loop rno-mir-295-1


Accession
MI0012611
Description
Rattus norvegicus rno-mir-295-1 precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
3 open access papers mention rno-mir-295-1
(8 sentences)

Sequence

197 reads, 7 reads per million, 45 experiments
cauuuuggugagACUCAAAUGUGGGGCACACUUCUggauuaugcguagaAAGUGCUACUACUUUUGGGUGUcuccuguggg
(((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).)))..

Structure
--   uuu  u  g       U    -     AC     gau 
  cau   gg ga ACUCAAA GUGG GGCAC  UUCUg   u
  |||   || || ||||||| |||| |||||  |||||   a
  gug   cc cU UGGGUUU CAUC UCGUG  Aagau   u
gg   --u  u  G       U    A     -A     gcg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 64536623-64536703 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rno-mir-295-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-295-5p

Accession MIMAT0012849
Description Rattus norvegicus rno-miR-295-5p mature miRNA
Sequence 13 - ACUCAAAUGUGGGGCACACUUCU - 35
Evidence experimental
SOLiD [2]

Mature rno-miR-295-3p

Accession MIMAT0017366
Description Rattus norvegicus rno-miR-295-3p mature miRNA
Sequence 50 - AAGUGCUACUACUUUUGGGUGU - 71
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39