Stem-loop sequence rno-mir-665

AccessionMI0012606 (change log)
DescriptionRattus norvegicus miR-665 stem-loop
Gene family MIPF0000404; mir-665
Literature search

6 open access papers mention rno-mir-665
(6 sentences)

Stem-loop 
   --agaaca     u   -           u      aucca  a    cu 
5'         ggguc ccu ugaggggccuc gccucu     gg uuau  u
           ||||| ||| ||||||||||| ||||||     || ||||   
3'         uccgg gga auucccuggag cggagg     cc agua  u
   ucucauuc     c   c           u      ----a  -    uu
Get sequence
Deep sequencing
3307 reads, 0 reads per million, 212 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr6: 133706457-133706550 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-665
rno-mir-493chr6: 133699509-133699592 [+]
rno-mir-337chr6: 133705920-133706016 [+]
rno-mir-3544chr6: 133705932-133706019 [-]
rno-mir-540chr6: 133706202-133706285 [+]
rno-mir-665chr6: 133706457-133706550 [+]
rno-mir-431chr6: 133711425-133711538 [+]
rno-mir-433chr6: 133712334-133712426 [+]
rno-mir-127chr6: 133713430-133713526 [+]
rno-mir-3543-1chr6: 133715345-133715459 [-]
rno-mir-434-1chr6: 133715378-133715458 [+]
rno-mir-3543-2chr6: 133716215-133716329 [-]
rno-mir-434-2chr6: 133716248-133716328 [+]
Database links

Mature sequence rno-miR-665

Accession MIMAT0012844
Sequence

55 -  

accaggaggcugaggucccuua

 - 76

Get sequence
Deep sequencing3293 reads, 212 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).