Stem-loop sequence rno-mir-675

Accession

MI0012603 (change log)

Description

Rattus norvegicus miR-675 stem-loop

Gene family

MIPF0000365; mir-675

Literature search

12 open access papers mention rno-mir-675
(59 sentences)

Stem-loop

   u  --              u    aa     cc      g    
5'  gc  ggcccagggacugg gcgg  agggc  acagug acu 
    ||  |||||||||||||| ||||  |||||  |||||| || u
3'  cg  cugggucccugacu cgcc  ucccg  ugucac ugg 
   a  gu              -    aa     ua      g    

Deep sequencing

1752 reads, 5.45 reads per million, 110 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 215745981-215746064 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir675
• miRBase Tracker:MI0012603

Mature sequence rno-miR-675-5p

• Accession: MIMAT0012841
• Previous IDs: rno-miR-675
• Sequence: 15 - uggugcggaaagggcccacagu - 36
• Deep sequencing: 105 reads, 42 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-675-5p
  • miRDB:rno-miR-675-5p
  • microrna.org:rno-miR-675-5p

Mature sequence rno-miR-675-3p

• Accession: MIMAT0017363
• Previous IDs: rno-miR-675*
• Sequence: 50 - uguaugcccuaaccgcucagu - 70
• Deep sequencing: 1639 reads, 100 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-675-3p
  • miRDB:rno-miR-675-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).