Stem-loop sequence rno-mir-511

Accession

MI0012591 (change log)

Description

Rattus norvegicus miR-511 stem-loop

Gene family

MIPF0000807; mir-511

Literature search

5 open access papers mention rno-mir-511
(11 sentences)

Stem-loop

   --   a    -  a  c        cu    ucag    uaa 
5'   gau ccca cc ug cuuuugcu  gcac    uaca   u
     ||| |||| || || ||||||||  ||||    ||||    
3'   cua gggu gg ac gaaaacga  ugug    gugu   c
   ac   g    a  -  a        --    -uaa    uua 

Deep sequencing

4508 reads, 0.254 reads per million, 394 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr17: 81382966-81383044 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000024736 ; Mrc1-201; intron 5

Database links

• EntrezGene:Mir511
• miRBase Tracker:MI0012591

Mature sequence rno-miR-511-5p

• Accession: MIMAT0012829
• Previous IDs: rno-miR-511
• Sequence: 10 - caugccuuuugcucugcacuc - 30
• Deep sequencing: 843 reads, 247 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-511-5p
  • miRDB:rno-miR-511-5p
  • microrna.org:rno-miR-511-5p

Mature sequence rno-miR-511-3p

• Accession: MIMAT0017358
• Previous IDs: rno-miR-511*
• Sequence: 49 - aauguguagcaaaagacagga - 69
• Deep sequencing: 3665 reads, 372 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-511-3p
  • miRDB:rno-miR-511-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).