Stem-loop sequence rno-mir-362

Accession

MI0012590 (change log)

Description

Rattus norvegicus miR-362 stem-loop

Gene family

MIPF0000209; mir-362

Literature search

4 open access papers mention rno-mir-362
(4 sentences)

Stem-loop

   cuc           acc        aa   u  u 
5'    gaauccuugga   uaggugug  ugc gc u
      |||||||||||   ||||||||  ||| ||  
3'    cuuaggaacuu   guccacac  acg ug c
   aaa           ---        -a   -  a 

Deep sequencing

10822 reads, 0 reads per million, 476 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chrX: 16117170-16117234 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-362

• rno-mir-532: chrX: 16109870-16109948 [+]
• rno-mir-188: chrX: 16110270-16110349 [+]
• rno-mir-362: chrX: 16117170-16117234 [+]
• rno-mir-3560: chrX: 16117863-16117974 [-]
• rno-mir-501: chrX: 16117874-16117957 [+]
• rno-mir-500: chrX: 16121332-16121411 [+]

Database links

• EntrezGene:Mir362
• miRBase Tracker:MI0012590

Mature sequence rno-miR-362-5p

• Accession: MIMAT0012828
• Previous IDs: rno-miR-362
• Sequence: 5 - aauccuuggaaccuaggugugaau - 28
• Deep sequencing: 2357 reads, 393 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-362-5p
  • miRDB:rno-miR-362-5p
  • microrna.org:rno-miR-362-5p

Mature sequence rno-miR-362-3p

• Accession: MIMAT0017357
• Previous IDs: rno-miR-362*
• Sequence: 42 - aacacaccuguucaaggauuca - 63
• Deep sequencing: 8465 reads, 460 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-362-3p
  • miRDB:rno-miR-362-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).