miRBase entry: rno-mir-362

Stem-loop rno-mir-362


Accession
MI0012590
Description
Rattus norvegicus rno-mir-362 precursor miRNA
Gene family
MIPF0000209; mir-362

Literature search
4 open access papers mention rno-mir-362
(4 sentences)

Sequence

8045 reads, 28 reads per million, 470 experiments
cucgAAUCCUUGGAACCUAGGUGUGAAUgcugcuucagugcAACACACCUGUUCAAGGAUUCAaa
...(((((((((((...((((((((..(((.........))).)))))))))))))))))))...

Structure
cuc           ACC        AA   ugc 
   gAAUCCUUGGA   UAGGUGUG  Ugc   u
   |||||||||||   ||||||||  |||   u
   CUUAGGAACUU   GUCCACAC  Acg   c
aaA           ---        -A   uga 


Annotation confidence High
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Genome context
chrX: 16117170-16117234 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-362
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-362-5p

Accession MIMAT0012828
Description Rattus norvegicus rno-miR-362-5p mature miRNA
Sequence 5 - AAUCCUUGGAACCUAGGUGUGAAU - 28
Evidence experimental
SOLiD [2]

Mature rno-miR-362-3p

Accession MIMAT0017357
Description Rattus norvegicus rno-miR-362-3p mature miRNA
Sequence 42 - AACACACCUGUUCAAGGAUUCA - 63
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39