Stem-loop sequence rno-mir-202

Accession

MI0012584 (change log)

Description

Rattus norvegicus miR-202 stem-loop

Gene family

MIPF0000121; mir-202

Literature search

4 open access papers mention rno-mir-202
(6 sentences)

Stem-loop

        u           -a          ug       
5' guucc uuuuccuaugc  uauacuucuu  uggauc 
   ||||| |||||||||||  ||||||||||  ||||| u
3' cgagg aaaaggguacg  auauggagaa  aucugg 
        u           cg          --       

Deep sequencing

28583 reads, 509 reads per million, 79 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 212295630-212295701 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir202
• miRBase Tracker:MI0012584

Mature sequence rno-miR-202-5p

• Accession: MIMAT0012822
• Previous IDs: rno-miR-202
• Sequence: 9 - uuccuaugcauauacuucu - 27
• Deep sequencing: 28308 reads, 77 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-202-5p
  • miRDB:rno-miR-202-5p
  • microrna.org:rno-miR-202-5p

Mature sequence rno-miR-202-3p

• Accession: MIMAT0017355
• Previous IDs: rno-miR-202*
• Sequence: 45 - agagguauagcgcaugggaaa - 65
• Deep sequencing: 273 reads, 28 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-202-3p
  • miRDB:rno-miR-202-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).