Stem-loop sequence mmu-mir-599

Accession

MI0012529 (change log)

Symbol

MGI:Mir599

Description

Mus musculus miR-599 stem-loop

Gene family

MIPF0000502; mir-599

Literature search

2 open access papers mention mmu-mir-599
(2 sentences)

Stem-loop

   ugcu     -ca   ua         a        ----      a 
5'     gucca   gug  uuugauaag ugacauag    gagagg a
       |||||   |||  ||||||||| ||||||||    ||||||  
3'     uaggu   uac  aaacuauuu acuguguu    cuuucu c
   -cag     cca   cc         g        ucca      u 

Deep sequencing

101 reads, 60 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr15: 35660831-35660918 [-]
• Overlapping transcripts:

  antisense

  ENSMUST00000048646 ; Vps13b-201; intron 30

Clustered miRNAs

< 10kb from mmu-mir-599

• mmu-mir-875: chr15: 35660970-35661047 [-]
• mmu-mir-599: chr15: 35660831-35660918 [-]

Database links

• EntrezGene:Mir599
• MGI:Mir599
• miRBase Tracker:MI0012529

Mature sequence mmu-miR-599

• Accession: MIMAT0012772
• Sequence: 55 - uugugucaguuuaucaaac - 73
• Deep sequencing: 25 reads, 6 experiments
• Evidence: by similarity; MI0003611
• Predicted targets:
  • TargetScanVert:mmu-miR-599
  • miRDB:mmu-miR-599
  • microrna.org:mmu-miR-599

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).