miRBase entry: mdo-mir-551b

Stem-loop mdo-mir-551b


Accession
MI0012521
Description
Monodelphis domestica mdo-mir-551b precursor miRNA
Gene family
MIPF0000360; mir-551


Sequence

592 reads, 28 reads per million, 2 experiments
ccccaGAAAUCAAGGAUGGGUGAGACCUcgugugcaaacugaaagGCGACCCAUACUUGGUUUCAGgggcu
((((.(((((((((..(((((..(.(((...((....))....)))).)))))..))))))))).))))..

Structure
--    a         GA     GA A   -cgu  g 
  cccc GAAAUCAAG  UGGGU  G CCU    gu c
  |||| |||||||||  |||||  | |||    ||  
  gggG CUUUGGUUC  ACCCA  C Gga    ca a
uc    A         AU     -G -   aagu  a 


Annotation confidence Not enough data
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Genome context
chr7: 234027689-234027759 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-551b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-551b-3p

Accession MIMAT0012764
Description Monodelphis domestica mdo-miR-551b-3p mature miRNA
Sequence 46 - GCGACCCAUACUUGGUUUCAG - 66
Evidence experimental
Illumina [2]

Mature mdo-miR-551b-5p

Accession MIMAT0026947
Description Monodelphis domestica mdo-miR-551b-5p mature miRNA
Sequence 6 - GAAAUCAAGGAUGGGUGAGACCU - 28
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45