miRBase entry: mdo-mir-497

Stem-loop mdo-mir-497


Accession
MI0012519
Description
Monodelphis domestica mdo-mir-497 precursor miRNA
Gene family
MIPF0000231; mir-497


Sequence

3635 reads, 69 reads per million, 5 experiments
ccugccuccgcccCAGCAGCACACUGUGGUUUGUucaguguuauggccaagucCAAACCACACUGUGGUGUUAGAgcgagggua
..(((((.(((.(.((((.((((.(((((((((..(.((......))...)..))))))))).)))).)))).).))).)))))

Structure
cc     c   c C    G    C         Uu --a  gu 
  ugccu cgc c AGCA CACA UGUGGUUUG  c   gu  u
  ||||| ||| | |||| |||| |||||||||  |   ||   
  auggg gcg G UUGU GUGU ACACCAAAC  g   cg  a
--     a   A A    G    C         cu aac  gu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 255707663-255707746 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-497
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-497-5p

Accession MIMAT0012762
Description Monodelphis domestica mdo-miR-497-5p mature miRNA
Sequence 14 - CAGCAGCACACUGUGGUUUGU - 34
Evidence experimental
Illumina [2]

Mature mdo-miR-497-3p

Accession MIMAT0026946
Description Monodelphis domestica mdo-miR-497-3p mature miRNA
Sequence 54 - CAAACCACACUGUGGUGUUAGA - 75
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45