Stem-loop mdo-mir-499

Accession

MI0012510

Description

Monodelphis domestica mdo-mir-499 precursor miRNA

Gene family

MIPF0000173; mir-499

Sequence

21070 reads, 371 reads per million, 4 experiments

gggcgggcagcugUUAAGACUUGCAGUGAUGUUUaauucuucucuaugugaACAUCACAACAAGUCUAUACAguuuccc
....(((.((((((..(((((((..((((((((((((........)).))))))))))..)))))))..)))))).)))

Structure

gggc   c      UA       CA          -  ucu 
    ggg agcugU  AGACUUG  GUGAUGUUUa au   u
    ||| ||||||  |||||||  |||||||||| ||    
    ccc uugACA  UCUGAAC  CACUACAagu ua   c
----   u      UA       AA          g  ucu 

Annotation confidence High

Genome context

chr1: 388424206-388424284 [+]

Mature mdo-miR-499-5p

• Accession: MIMAT0012753
• Description: Monodelphis domestica mdo-miR-499-5p mature miRNA
• Sequence: 14 - UUAAGACUUGCAGUGAUGUUU - 34
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-499-3p

• Accession: MIMAT0026943
• Description: Monodelphis domestica mdo-miR-499-3p mature miRNA
• Sequence: 52 - ACAUCACAACAAGUCUAUACA - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45