miRBase entry: mdo-mir-139

Stem-loop mdo-mir-139


Accession
MI0012500
Description
Monodelphis domestica mdo-mir-139 precursor miRNA
Gene family
MIPF0000117; mir-139


Sequence

8063 reads, 143 reads per million, 5 experiments
uguauUCUACAGUGCAUGUGUCUccagugugacuaagggacUGGAGAUACAGCCCUGUUGGAAUaacaa
((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).

Structure
-   -      -   U  A            g ga 
 ugu auUCUA CAG GC UGUGUCUccagu u  c
 ||| |||||| ||| || |||||||||||| |  u
 aca UAAGGU GUC CG ACAUAGAGGUca g  a
a   a      U   C  -            g ga 


Annotation confidence High
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Genome context
chr4: 347282326-347282394 [+]

Database links

Mature mdo-miR-139-5p

Accession MIMAT0012744
Description Monodelphis domestica mdo-miR-139-5p mature miRNA
Sequence 6 - UCUACAGUGCAUGUGUCU - 23
Evidence experimental
Illumina [2]

Mature mdo-miR-139-3p

Accession MIMAT0026936
Description Monodelphis domestica mdo-miR-139-3p mature miRNA
Sequence 42 - UGGAGAUACAGCCCUGUUGGAAU - 64
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45